Journal of Northeastern University Natural Science ›› 2020, Vol. 41 ›› Issue (2): 158-162.DOI: 10.12068/j.issn.1005-3026.2020.02.002

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Modelling of Gene Regulatory Networks by Parent Node Screening-Based Bayesian Method

QU Lu-xuan1, GUO Shang-hui1, WANG Zhi-qiong1,2, XIN Jun-chang3,4   

  1. 1. School of Medicine & Biological Information Engineering, Northeastern University, Shenyang 110169, China; 2. Neusoft Research of Intelligent Healthcare Technology Co., Ltd., Shenyang 110179, China; 3. School of Computer Science & Engineering, Northeastern University, Shenyang 110169, China; 4. Key Laboratory of Big Data Management and Analytics
  • Received:2019-04-17 Revised:2019-04-17 Online:2020-02-15 Published:2020-03-06
  • Contact: WANG Zhi-qiong
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Abstract: Among the methods for modeling gene regulation networks, Bayesian network model can intuitively express the regulatory relationship between genes. However, due to the high complexity of Bayesian network model in the structure learning, the efficiency of the gene regulation networks modeling is low and the scale of the reconstructed network is limited. Therefore, this paper proposed a method which is called the parent node screening-based Bayesian network(PS-BN). The PS-BN method combines the correlation model with Bayesian network model. Under the premise of making full use of the search strategy of structure learning in Bayesian network model, the parent node screening method is used to remove some redundant nodes, thus reducing the search space. The experimental results show that compared with the Bayesian network model, the PS-BN method greatly improves the efficiency of modeling gene regulatory networks while improving the accuracy.

Key words: gene regulatory networks, parent node screening, Bayesian network model, correlation model, structure learning

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