Journal of Northeastern University Natural Science ›› 2014, Vol. 35 ›› Issue (4): 588-592.DOI: 10.12068/j.issn.1005-3026.2014.04.030

• Resources & Civil Engineering • Previous Articles     Next Articles

Extraction Methods of Microbial Total DNA from Oil Shales

JIANG Shaoyan1, WANG Wenxing1,2, XUE Xiangxin1, HOU Xiaojiao2   

  1. 1. School of Materials & Metallurgy, Northeastern University, Shenyang 110819, China; 2. School of Life & Health Sciences, Northeastern University, Shenyang 110819, China.
  • Received:2013-07-01 Revised:2013-07-01 Online:2014-04-15 Published:2013-11-22
  • Contact: XUE Xiangxin
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Abstract: In order to develop an appropriate method for extracting microbial total DNA from oil shales, 5 methods (SDShighsalt extraction, SDSgrindinginliquidnitrogen extraction, SDS repeated freezethaw extraction, SDS guanidinium isothiocyanate extraction and kit extraction) were tested to extract total DNA of 6 different samples from two mines, respectively. The results showed that the total DNA extraction effects of five methods vary significantly. The improved SDShighsalt extraction method is the best, which can obtain total DNA with about 23kb length and 9144~38685ng·g-1 dry sample. The yield rate is significantly higher than other methods. Then, the total DNAs without purification process were used as amplification templates, and 16S rDNA was carried out PCR amplification and DGGE electrophoresis, the corresponding PCR products and DGGE fingerprint were obtained. This shows that the improved SDShighsalt extraction method is suitable for oil shale samples. SDSgrindinginliquidnitrogen extraction and SDS repeated freezethaw extraction are only able to extract microbial total DNA of part of the samples, and with low yield and purity. SDS guanidinium isothiocyanate extraction and kit extraction methods are not suitable for oil shale samples.

Key words: oil shale, microbial total DNA, extraction method, PCRDGGE, SDShighsalt extraction

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